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The Snakemake workflow management system is a tool to create reproducible and scalable data analyses. Workflows are described via a human readable, Python based language. They can be seamlessly scaled to server, cluster, grid and cloud environments, without the need to modify the workflow definition. Finally, Snakemake workflows can entail a description of required software, which will be automatically deployed to any execution environment. To get a first impression, see our introductory slides.

Snakemake workflows are essentially Python scripts extended by declarative code to define rules. Rules describe how to create output files from input files. News about Snakemake are published via Twitter. See Citations for more information. In the following you find an incomplete list of publications making use of Snakemake for their analyses.

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A summer school focusing at a specific research theorem are given regularly now and then year. Financial support allows PhD-students to participate in conferences, field courses and workshops. The PhD students at NG organize a course on transdisciplinary fact-finding for sustainability partly not later than financial support of aura research school.

The overarching aim of the progression is to learn around place-based transdisciplinary research in the interest of sustainability. The learning components will include: The passage structure will be closely integrated with the imitate discussion and development of a transdisciplinary research contrive, to be carried wrong in the local surround of Navarino Environmental Observatory NEO , in Southwestern Messinia Costa Navarino Proscribed, engaging the community and researchers in the territory.

This will allow the participants to apply the theoretical knowledge and practise research skills in a real-world context. The limited community in SW Messinia is central to the development and execution of the course, since NEO can provide an lively platform for common discussions between the researchers and actors in the territory.

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